Okay a few posts ago I mentioned that I had been successful in setting up my laptop as a virtual supercomputer.

Here are hopefully some relatively clear instructions on how simple it was to do.

Setting up a MPI development system on Ubuntu Linux

1. Download Ubuntu – check out the latest version at www.ubuntu.com

2. Intall the required mpi files.

   1. Open a new terminal window.

   2. Enter: sudo apt-get install libopenmpi1

   3. Enter: sudo apt-get install libopenmpi-dbg

   4. Enter: sudo apt-get install libopenmpi-dev

   5. Enter: sudo apt-get install openmpi-bin

   6. Enter: sudo apt-get install openmpi-common

   7. Enter: sudo apt-get install openmpi-dev

3. Test the mpi install by compiling and running a simple program

   1. mpicc testfile.c -o testfile

   2. mpirun -np 2 ./testfile

      1. Where np is the number of cores * number of processes on your system.

      2. e.g. on a two core laptop np should be 2.

4. If you get an error regarding ssh when you enter the mpirun command install ssh

   1. sudo apt-get install ssh

5. If you get requested for your password everytime you run mpirun set up a stored RSA key control

   1. cd $HOME

   2. ssh-keygen -t dsa

   3. cp .ssh/id_dsa.pub .ssh/authorized_keys2

Further reference:

http://www.csc.cam.ac.uk/academic/practicals.html

http://www.math.umbc.edu/~gobbert/mpi.html

Tags: Computer Science, Linux, MPI, Supercomputers, Ubuntu

This entry was posted on Friday, April 10th, 2009 at 7:10 pm and is filed under Computers, University. You can follow any responses to this entry through the RSS 2.0 feed. Both comments and pings are currently closed.